TY - JOUR T1 - Theoretical Foundations of Geometric Deep Learning for Amorphous Structures: Beyond the Periodicity Assumption AU - Thomas Andersen AU - Lars Nielsen AU - Mette Sørensen JF - Journal of Computational and Data-Driven Materials Engineering JO - J. Comput. Data-Driven Mater. Eng. SN - 3149-9368 Y1 - 2025 VL - 4 IS - 1 DO - 10.68159/u729969158 SP - 46 N2 - Geometric deep learning has advanced computational materials science, yet most existing approaches remain constrained by the periodicity assumption inherent to crystalline systems. While crystal-based graph neural networks exploit translational symmetry and periodic boundary conditions, amorphous materials—such as glasses, liquids, polymers, and disordered alloys—lack long-range order, exhibit non-repetitive atomic arrangements, and span widely varying system sizes. This mismatch renders periodicity-dependent methods both theoretically inadequate and practically unreliable for disordered structures. This work identifies three key distinctions—non-periodic graph construction, symmetry limited to E(3) equivariance, and non-physical boundary conditions—which collectively give rise to fundamental challenges, including scaling limitations, loss of transferability, and structural representation imbalances. Through theoretical analysis, the limitations of crystal-oriented graph neural networks in amorphous settings are clarified. To address these issues, a new framework is proposed based on size-extensive, E(3)-equivariant architectures that eliminate periodic assumptions and integrate multi-scale encoding of local, intermediate, and global structure with size-normalized aggregation. This formulation provides a principled foundation for geometric deep learning models tailored to amorphous materials and their applications in energy, optics, and structural systems. UR - https://iamrp.net/u729969158 ER -