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Benchmarking Practices for ML Interatomic Potentials: A Critical Review of Methodological Pitfalls and What Was Missed (2017–2023)
Benchmarking has become central to the development of machine learning interatomic potentials (MLIPs), yet the epistemic reliability of reported comparisons remains insufficiently scrutinized. This review synthesizes prevailing practices and demonstrates that current evaluation protocols systematically misrepresent model progress. A coherent taxonomy of methodological failure emerges, spanning opaque data handling, structurally flawed train–test partitioning, restricted metric selection, weak baseline construction, limited reproducibility, and the near absence of extrapolation analysis. Under these conditions, widely cited performance indicators—such as sub-10 meV/atom energy MAE or sub-0.1 eV/Å force RMSE—primarily capture interpolation within constrained training distributions, offering limited insight into generalization, dynamical stability, or deployment viability. A related deficiency lies in the systematic exclusion of physically and computationally salient regimes, including long-range interactions, finite-temperature behavior, low-symmetry and disordered structures, calibrated uncertainty, defect-rich configurations, and explicit cost–accuracy trade-offs. Existing benchmark suites, including Materials Project–derived datasets, QM9 adaptations, COMP6, and bespoke collections, inherit these constraints, reinforcing an evaluative paradigm that privileges narrow optimization over robust, application-relevant performance. Recasting benchmark outcomes as contingent on methodological design rather than intrinsic model capability reveals how evaluation choices implicitly structure model rankings. In response, this work advances a set of directly implementable standards: diversified splitting strategies, distribution-aware multi-metric reporting, transparent baseline inclusion, controlled extrapolation regimes, complete reproducibility artifacts, and normalized cost accounting. Aligning benchmarking practice with these principles is necessary to transition from incremental leaderboard gains toward reliable and transferable interatomic potentials for materials discovery.
Journal of Computational and Data-Driven Materials Engineering
Review | Open access | 18 January 2024 | Article: 28

Benchmarking Without Reality: Dataset Construction Bias in Materials Evaluation
In the rapidly evolving field of computational and data-driven materials engineering, machine learning models are increasingly deployed for property prediction, inverse design, and autonomous discovery. However, the integrity of these models hinges on the quality of training datasets, which often embed subtle biases arising from construction methodologies. This manuscript explores the conceptual underpinnings of dataset construction bias in materials AI evaluation, framing it as an epistemic challenge that distorts benchmarking outcomes and impedes genuine materials discovery. We introduce the Dataset Integrity Cascade (DIC) framework, a layered conceptual model that maps data curation processes to inference distortions, incorporating feedback mechanisms to reveal how biases propagate through representation learning, model training, and validation pipelines. By synthesizing recent advances in materials informatics, graph neural networks, and uncertainty quantification, the framework highlights systemic trade-offs between dataset scale and representational fidelity. Implications extend to high-throughput computation, closed-loop experimentation, and foundation models for science, suggesting pathways for more robust computational steering in materials design. This work underscores the need for integrative approaches that align dataset architectures with the inherent complexities of materials systems, fostering epistemically sound innovation without empirical validation.
Journal of Computational and Data-Driven Materials Engineering
Original Research | Open access | 18 March 2023 | Article: 95
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